Genomic designing for biotic stress resistant technical crops / edited by Chittaranjan Kole.

Format:

Book

Contributor:

Kole, Chittaranjan, editor.

Language:

English

Subjects (All):

Agricultural pests.

Crops--Effect of stress on.

Crops.

Physical Description:

1 online resource (635 pages)

Place of Publication:

Cham, Switzerland : Springer, [2022]

Summary:

Biotic stresses cause yield loss of 31-42% in crops in addition to 6-20% during post-harvest stage. Understanding interaction of crop plants to the biotic stresses caused by insects, bacteria, fungi, viruses, and oomycetes, etc. is important to develop resistant crop varieties. Knowledge on the advanced genetic and genomic crop improvement strategies including molecular breeding, transgenics, genomic-assisted breeding and the recently emerging genome editing for developing resistant varieties in technical crops is imperative for addressing FHEE (food, health, energy and environment) security. Whole genome sequencing of these crops followed by genotyping-by-sequencing have facilitated precise information about the genes conferring resistance useful for gene discovery, allele mining and shuttle breeding which in turn opened up the scope for 'designing' crop genomes with resistance to biotic stresses. The 15 chapters dedicated to 13 technical crops and 2 technical crop groups in this volume will deliberate on different types of biotic stress agents and their effects on and interaction with crop plants; will enumerate on the available genetic diversity with regard to biotic stress resistance among available cultivars; illuminate on the potential gene pools for utilization in interspecific gene transfer; will brief on the classical genetics of stress resistance and traditional breeding for transferring them to their cultivated counterparts; will enunciate the success stories of genetic engineering for developing biotic stress resistant varieties; will discuss on molecular mapping of genes and QTLs underlying biotic stress resistance and their marker-assisted introgression into elite varieties; will enunciate on different emerging genomics-aided techniques including genomic selection, allele mining, gene discovery and gene pyramiding for developing resistant crop varieties with higher quantity and quality; and will also elaborate some case studies on genomeediting focusing on specific genes for generating disease and insect resistant crops.

Contents:

Intro

Preface

Contents

Contributors

Abbreviations

1 Genomic Designing for Biotic Stress Resistant Cassava

1.1 Biotic Stress in Cassava

1.1.1 Prevalent Cassava Biotic Factors

1.1.2 Regional Incidence of Cassava Pests and Diseases

1.1.3 Economic Impact of Biotic Stress on Cassava Production and Utilization

1.2 Biotic Factors Affecting Cassava Production

1.2.1 Diseases

1.2.2 Pests

1.3 Approaches for Developing Biotic Stress Resistant Cassava Varieties

1.3.1 Conventional Breeding Approach for Developing Biotic Stress Resistant Cassava Varieties

1.3.2 Molecular Techniques for Biotic Stress Improvement in Cassava

1.3.3 The Adoption of Genetic Engineering in Genomic Designing for Biotic Stress Resistant Cassava

1.3.4 Genome Editing in Genomic Designing for Biotic Stress Resistant Cassava

1.4 Future Perspectives in the Genomic Designing for Biotic Stress Resistant Cassava

References

2 Genomic Designing for Biotic Stress Resistant Cocoa Tree

2.1 Introduction

2.2 Description on Different Biotic Stresses

2.2.1 Frosty Pod Rot of Cocoa

2.2.2 Witches' Broom Disease

2.2.3 Black Pod Rot

2.2.4 Ceratocystis Wilt of Cacao

2.2.5 Cocoa Swollen Shoot Virus

2.2.6 Other Diseases and Pests

2.3 Genetic Resources of Resistance Genes

2.4 Glimpses on Classical Genetics and Traditional Breeding

2.4.1 Breeding Objectives

2.4.2 Classical Mapping Efforts

2.4.3 Classical Breeding Achievements

2.4.4 Limitations of Traditional Breeding and Rationale for Molecular Breeding

2.5 Brief on Diversity Analysis of Cocoa Germplasm

2.5.1 Phenotype-Based Diversity Analysis

2.5.2 Genotype-Based Diversity Analysis

2.6 Brief Account of Molecular Mapping of Resistance Genes and QTLs

2.6.1 Genetic Maps of Cocoa, Marker Evolution and Segregating Populations.

2.6.2 QTL Regions Disease Resistance in Cocoa

2.7 Cocoa Germplasm Characterization

2.8 Map-Based Cloning of Resistance Genes

2.8.1 BAC Libraries

2.8.2 Cytogenetic Studies

2.9 Genomics-Aided Breeding for Resistance Traits

2.9.1 Large Scale Transcriptomic Resources

2.9.2 Genome Sequencing

2.9.3 Proteomics Resources

2.9.4 Bases for Marker Assisted Selection

2.10 Brief on Genetic Engineering for Resistance Traits and Recent Concepts and Strategies Developed

2.10.1 Review on Achievements of Transgenics

2.10.2 Genome Editing

2.10.3 Nanotechnology

2.11 Brief Account on Tole of Bioinformatics as a Tool

2.11.1 Gene and Genome Databases

2.11.2 Comparative Genome Databases

2.11.3 Gene Expression Databases

2.11.4 Protein Databases

2.11.5 Integration of Different Data

3 Genomic Designing for Biotic Stress Resistance in Coconut

3.1 Introduction

3.2 Diseases of Coconut

3.2.1 Leaf Rot

3.2.2 Bud Rot

3.2.3 Stem Bleeding

3.2.4 Ganoderma Wilt/Basal Stem Rot

3.2.5 Immature Nut Fall

3.2.6 Grey Leaf Spot

3.2.7 Lasiodiplodia Leaf Blight of Coconut

3.2.8 Phytoplasmal Diseases of Coconut

3.2.9 Diseases Caused by Viruses and Viroids

3.3 Pests of Coconut

3.4 Genetic Resources of Resistance/Tolerance Genes

3.5 Classical Genetics and Traditional Breeding

3.6 Association Mapping Studies

3.7 Molecular Mapping of Resistance Genes and QTLs and Marker-Assisted Breeding

3.8 Genomics-Aided Breeding for Resistance Traits

3.8.1 Whole-Genome Sequence Assemblies

3.8.2 Transcriptomic Approaches

3.9 Conclusion and Future Perspectives

4 Current Challenges and Genomic Advances Toward the Development of Coffee Genotypes Resistant to Biotic Stress

4.1 Introduction

4.2 Genomic Analyses for Major Biotic Stresses in Coffee.

4.3 Transcriptome Studies for Major Biotic Stresses in Coffee

4.4 Genetic Transformation, RNAi, and Genome Editing for Biotic Stress in Coffee

4.5 Breeding for Biotic Stress Resistance in Coffee: Some Case Studies

4.5.1 Coffee Leaf Rust (CLR)

4.5.2 Coffee Berry Disease (CBD)

4.5.3 Bacterial Halo Blight (BHB)

4.5.4 Nematodes

4.5.5 Coffee Leaf Miner (CLM)

4.5.6 Coffee Berry Borer (CBB)

4.6 Final Remarks

5 Disease Resistance in Cotton

5.1 Introduction

5.2 Bacterial Blight

5.2.1 Causal Agent and Significance

5.2.2 Resistant Germplasm

5.2.3 Genetics of Resistance

5.2.4 Resistance Breeding

5.2.5 Molecular Mapping of BB Resistance Genes

5.2.6 Marker-Assisted Selection (MAS)

5.3 Verticillium Wilt

5.3.1 Causal Agent and Significance

5.3.2 Screening Techniques and Resistance Sources

5.3.3 Resistance Breeding

5.3.4 Genetics of Resistance

5.3.5 Mapping of Verticillium Wilt Resistance QTLs

5.3.6 Marker-Assisted Selection for VW Resistance

5.4 Fusarium Wilt

5.4.1 Causal Agent and Significance

5.4.2 Sources of Resistance

5.4.3 Resistance Breeding

5.4.4 Genetics of Resistance

5.4.5 Molecular Mapping of FW Resistance Quantitative Trait Loci

5.4.6 Molecular Breeding Techniques

5.5 Future Prospects

6 Conventional and Molecular Interventions for Biotic Stress Resistance in Floricultural Crops

6.1 Introduction

6.2 Biotic Stress in Floriculture Crops

6.3 Different Approaches to Alleviate Biotic Stress in Ornamentals

6.3.1 Conventional Breeding

6.3.2 Molecular Approaches

6.4 Conclusion

7 Genomics for Biotic Stress Tolerance in Jute

7.1 Introduction

7.1.1 Economic Importance

7.1.2 Reduction in Yield and Quality Due to Biotic Stresses

7.1.3 Growing Importance in the Face of Climate Change.

7.1.4 Limitations of Traditional Breeding and Rationale of Genome Designing

7.2 Description on Different Biotic Stresses

7.2.1 Major Insect-Pests of Jute and Their Management

7.2.2 Diseases of Jute

7.3 Traditional Breeding Methods

7.3.1 Intraspecific Hybridization

7.3.2 Interspecific Hybridization

7.3.3 Limitations of Classical Genetics and Breeding in Developing Resistant Cultivars

7.4 Genetic Resources of Resistance Genes

7.5 Resistance Gene-Based Marker Development and Utilization

7.5.1 Utilization of Resistance Gene-Based Genic Markers for Domestication and Population Genetic Analyses in Jute

7.5.2 Use in Phylogenetic Analysis

7.5.3 Use of RGA in Population Structure Analysis

7.6 Genomics-Aided Breeding for Resistance Traits

7.6.1 Genomics to Decipher Plant-Pathogen Interaction Pathways in Jute

7.6.2 Genomics for Identifying Genes Involved in Resistance to Stem Rot Disease

7.6.3 Genomics for Deciphering Systemic Acquired Resistance

7.6.4 Deciphering Role of Chitinase in Resistance

7.7 Brief Account of Molecular Mapping of Resistance Genes and QTLs

7.8 Brief on Genetic Engineering for Resistance Traits

7.9 Future Perspectives

8 Genomic Designing for Biotic Stress Resistance in Mulberry

8.1 Introduction

8.1.1 Economic Significance

8.1.2 Effect of Biotic Stress on Yield and Quality

8.1.3 Increasing Population and Climate Change Scenario

8.1.4 Logical of Genome Designing and Bottlenecks of Traditional Breeding

8.2 Description of Different Pathogens Causing Biotic Stress in Mulberry

8.2.1 Major Diseases in Mulberry

8.2.2 Major Insect and Pests in Mulberry

8.3 Germplasm Resources for Disease Resistance

8.3.1 Primary Gene Pool

8.3.2 Secondary Gene Pool

8.3.3 Tertiary Gene Pool

8.3.4 Artificially Induced/Incorporated Traits/Genes.

8.4 Overview on Classical Genetics and Traditional Breeding

8.4.1 Traditional Breeding Methods

8.4.2 Breeding Objectives: Positive and Negative Selection

8.4.3 Achievements of Conventional Breeding (Quality, Stress Resistance, Yield etc.)

8.4.4 Constrains of Conventional Breeding and Basis for Molecular Breeding

8.4.5 Classical Mapping Efforts and Its Limitations and Utility of Molecular Mapping If Any

8.4.6 Use of Morphological Markers

8.4.7 Limitations and Prospect of Genomic Designing

8.5 Diversity Analysis in Brief

8.5.1 Diversity Analysis Based on Phenotype

8.5.2 Diversity Analysis Based on Genotype, Molecular Markers Applied

8.5.3 Relationship with Other Cultivated Species and Wild Relatives

8.5.4 Association with Geographical Distribution

8.5.5 Scope of Genetic Diversity

8.6 Association Mapping Studies

8.6.1 Genome Wide LD Studies

8.6.2 Future Potential for the Application of Association Studies for Germplasm Enhancement

8.7 Map-Based Cloning of Resistance/Tolerance Genes

8.7.1 Traits and Genes

8.8 Genomics-Assisted Breeding for Resistance/Tolerance Traits

8.8.1 Functional and Structural Genomic Resources Developed

8.8.2 Genome Sequencing, Assembly and Annotation

8.8.3 Impact on Gene Discovery and Germplasm Characterization

8.9 Recent Concepts and Strategies Developed

8.9.1 Gene Editing

8.10 Brief on Genetic Engineering for Resistance/Tolerance Traits

8.10.1 Target Traits and Alien Genes

8.11 Future Perspectives

9 Genomic Designing for Biotic Stress Resistance in Sugarcane

9.1 Introduction

9.1.1 Economic Importance of Sugarcane

9.1.2 Reduction in Yield and Quality Due to Biotic Stresses

9.1.3 Growing Importance in the Face of Climate Change and Increasing Population.

9.1.4 Limitations of Traditional Breeding and Rational of Genome Designing.

Notes:

Description based on print version record.

Other Format:

Print version: Kole, Chittaranjan Genomic Designing for Biotic Stress Resistant Technical Crops

ISBN:

9783031092930