Computational Design of Membrane Proteins / edited by Irina S. Moreira, Miguel Machuqueiro, Joana Mourão.

Format:

Book

Contributor:

Moreira, Irina S., Editor.

Machuqueiro, Miguel, Editor.

Mourão, Joana, Editor.

SpringerLink (Online service)

Series:

Springer Protocols (Springer-12345)

Methods in molecular biology 1940-6029 ; 2315

Methods in Molecular Biology, 1940-6029 ; 2315

Language:

English

Subjects (All):

Proteins.

Protein Biochemistry.

Local Subjects:

Protein Biochemistry.

Physical Description:

1 online resource (XI, 290 pages) : 57 illustrations, 53 illustrations in color.

Edition:

1st ed. 2021.

Contained In:

Springer Nature eBook

Place of Publication:

New York, NY : Springer US : Imprint: Humana, 2021.

System Details:

text file PDF

Summary:

This volume provides an overview of the current successes as well as pitfalls and caveats that are hindering the design of membrane proteins. Divided into six parts, chapters detail membrane transporter, FoldX force field, protein stability, G-Protein Coupled Receptors (GPCR) structures, transmembrane helices, membrane molecular dynamics (MD) simulations, pH-dependent protonation states, membrane permeability, and passive transport. Written in the highly successful Methods in Molecular Biology series format, chapters include introductions to their respective topics, lists of the necessary materials and reagents, step-by-step, readily reproducible laboratory protocols, and tips on troubleshooting and avoiding known pitfalls. Authoritative and cutting-edge, Computational Design of Membrane Proteins aims to ensure successful results in the further study of this vital field. Chapter 4 is available open access under a Creative Commons Attribution 4.0 International License via link.springer.com.

Contents:

Guardians of the Cell: State-of-the-Art of Membrane Proteins from a Computational Point-of-View

Integrating Membrane Transporter Proteins into Droplet Interface Bilayers

Membrane Protein Engineering with Rosetta

Engineering of Biological Pathways: Complex Formation and Signal Transduction.p Homology Modeling of Class a G-protein-coupled Receptors in the Age of the Structure Boom

Interface Prediction for GPCR Oligomerization between Transmembrane Helices

Memdock: An α-Helical Membrane Protein Docking Algorithm

Identification and Characterization of specific Protein-Lipid Interactions using Molecular Simulation

Molecular Dynamics Simulation of Lipid-modified Signaling Proteins

In silico Prediction of the Binding, Folding, Insertion, and Overall Stability of Membrane-Active Peptides

pKa Calculations in Membrane Proteins from Molecular Dynamics Simulations

Poor person's pH Simulation of Membrane Proteins

Preparing and Analyzing Polarizable Molecular Dynamics Simulations with the Classical Drude Oscillator Model

In silico Prediction of Permeability Coefficients

Identification of Pan Assay INterference compoundS (PAINS) using an MD-Based Protocol

Transmembrane Anion Transport Mediated by Halogen Bonds: using Off-Center Charges.

Other Format:

Printed edition:

ISBN:

978-1-0716-1468-6

9781071614686

Access Restriction:

Restricted for use by site license.