Genomic designing for abiotic stress resistant pulse crops / Chittaranjan Kole, editor.

Format:

Book

Contributor:

Kole, Chittaranjan, editor.

Language:

English

Subjects (All):

Crop improvement.

Legumes--Biotechnology.

Legumes--Effect of stress on.

Physical Description:

1 online resource (399 pages)

Place of Publication:

Cham, Switzerland : Springer, [2022]

Summary:

This book presents deliberations on molecular and genomic mechanisms underlying the interactions of crop plants to the abiotic stresses caused by heat, cold, drought, flooding, submergence, salinity, acidity, etc., important to develop resistant crop varieties. Knowledge on the advanced genetic and genomic crop improvement strategies including molecular breeding, transgenics, genomic-assisted breeding, and the recently emerging genome editing for developing resistant varieties in pulse crops is imperative for addressing FHNEE (food, health, nutrition, energy, and environment) security. Whole genome sequencing of these crops followed by genotyping-by-sequencing has provided precise information regarding the genes conferring resistance useful for gene discovery, allele mining, and shuttle breeding which in turn opened up the scope for 'designing' crop genomes with resistance to abiotic stresses. The nine chapters each dedicated to a pulse crop in this volume elucidate on different types of abiotic stresses and their effects on and interaction with the crop; enumerate on the available genetic diversity with regard to abiotic stress resistance among available cultivars; illuminate on the potential gene pools for utilization in interspecific gene transfer; present brief on classical genetics of stress resistance and traditional breeding for transferring them to their cultivated counterparts; depict the success stories of genetic engineering for developing abiotic stress-resistant crop varieties; discuss on molecular mapping of genes and QTLs underlying stress resistance and their marker-assisted introgression into elite varieties; enunciate on different genomics-aided techniques including genomic selection, allele mining, gene discovery, and gene pyramiding for developing adaptive crop varieties with higher quantity and quality of yields, and also elaborate some case studies on genome editing focusing on specific genes for generating abiotic stress-resistant crops.

Contents:

Intro

Preface

Contents

Contributors

Abbreviations

1 Designing Common Bean (Phaseolus vulgaris L.) for Abiotic Stress Tolerance

1.1 Introduction

1.2 Genetic Resources of Abiotic Stress Tolerance

1.3 Molecular Mapping of QTLs Underlying Abiotic Stress Tolerance

1.4 Genomic and Transcriptomic Resources

1.5 Prospects and Conclusions

References

2 A Scintillating Journey of Genomics in Simplifying Complex Traits and Development of Abiotic Stress Resilient Chickpeas

2.1 Introduction

2.2 Abiotic Stresses Affecting Chickpea

2.2.1 Drought Stress

2.2.2 Heat Stress

2.2.3 Cold Stress

2.2.4 Salinity Stress

2.3 Advancements in Genomics to Combat Abiotic Stress in Chickpea

2.4 Application of Transgenic Technology to Combat Abiotic Stresses in Chickpea

2.5 Chickpea Molecular Breeding Lines Released Using Genomic Tools

2.6 Application of Novel Breeding Approaches for Accelerating Abiotic Stress Tolerance in Chickpea

2.6.1 Multi-parent Populations

2.6.2 Speed Breeding

2.7 Emerging Stresses in the Context of Climate Change

2.8 Conclusions and Future Perspectives

3 Genomic Designing for Abiotic Stress Tolerance in Pea (Pisum Sativum L.)

3.1 Introduction

3.2 Key Abiotic Stresses

3.2.1 Heat Stress

3.2.2 Cold Stress

3.2.3 Drought Stress

3.2.4 Salinity

3.2.5 Waterlogging

3.2.6 Nutrient Use Efficiency

3.3 Genetic Resources

3.3.1 Primary and Secondary Gene Pool

3.3.2 Tertiary Gene Pool

3.4 Conventional Breeding for Abiotic Stress Resistance

3.5 Limitations of Conventional Breeding

3.6 Diversity Exploration

3.6.1 Phenotype-Based Diversity Analysis

3.6.2 Genotype-Based Diversity Analysis

3.7 Crop Wild Relatives

3.7.1 CWR and Their Geographical Distribution

3.7.2 Extent of Genetic Diversity in CWR.

3.8 Association Mapping Studies

3.8.1 Linkage Disequilibrium (LD)

3.8.2 Target Gene-Based LD Studies

3.8.3 Genome-Wide LD Studies

3.8.4 Potential of Association Studies for Genetic Enhancement

3.9 Molecular Mapping of Resistance and Quantitative Trait Loci

3.9.1 Mapping Software Used

3.9.2 Classical Mapping Efforts

3.9.3 QTL Mapping

3.9.4 Mendelization of QTLs

3.10 Marker Assisted Breeding (MAB) for Resistance Traits

3.10.1 Marker-Assisted Gene Introgression

3.10.2 Gene Pyramiding (GP)

3.10.3 Limitations of Marker Assisted Selection

3.11 Map-Based Cloning of Resistance/Tolerance Genes/QTLs

3.11.1 Traits and Genes

3.11.2 Genomic Libraries

3.11.3 Test for Expression

3.12 Genomics Assisted Breeding

3.12.1 Genetic Resources

3.12.2 Genome Sequencing

3.12.3 Gene Annotation

3.12.4 Genomics Assisted Breeding Applications

3.13 Recent Concepts and Strategies

3.13.1 Targeting Induced Local Lesions in Genomes (TILLING)

3.13.2 Gene Editing

3.13.3 Nanotechnology

3.14 Genetic Engineering for Resistance/Tolerance Traits

3.14.1 Gene Transformation

3.14.2 Organelle Transformation

3.14.3 Gene Stacking

3.14.4 Gene Silencing

3.14.5 Prospects of Cisgenics

3.15 Bioinformatics Tools

3.15.1 Gene and Genome Database

3.15.2 Gene Expression Database

3.15.3 Comparative Genome Database

3.15.4 Protein or Metabolomics Database

3.16 Social, Political and Regulatory Issues

3.16.1 Patent and Intellectual Property Rights

3.16.2 Traditional Knowledge

3.16.3 Participatory Breeding

3.17 Future Perspectives

4 Advanced Breeding Strategies for Abiotic Stress Tolerance in Cowpea

4.1 Introduction

4.2 Available Germplasm

4.3 Abiotic Stress Tolerance Related Traits

4.3.1 Root Characters

4.3.2 Heat and Cold Tolerance.

4.3.3 Drought Tolerance

4.3.4 Salinity Tolerance

4.3.5 Herbicide Tolerance

4.3.6 Nutrient Use Efficiency

4.3.7 Aluminium Toxicity

4.4 Sources of Abiotic Stress Tolerance Genes

4.5 Genetic Diversity Analysis

4.5.1 Phenotype-Based Diversity Analysis

4.5.2 Genotype-Based Diversity Analysis Based on Molecular Marker Studies

4.5.3 Molecular Mapping in Cowpea for Abiotic Stress Resistance

4.5.4 Molecular Breeding

4.5.5 Genomics Assisted Breeding

4.6 Classical Genetics and Traditional Breeding for Abiotic Stress Tolerance

4.6.1 Heat and Cold Tolerance

4.6.2 Root Characters and Drought Tolerance

4.6.3 Salinity and Aluminium Tolerance

4.6.4 Herbicide Tolerance

4.7 Needs in Breeding and Genetics of Cowpea

4.8 Future Prospects in Genetic Improvement

5 Breeding for Abiotic Stress Tolerance in Lentil in Genomic Era

5.1 Introduction

5.1.1 Nutritional Value of Lentil

5.1.2 Reduction in Yield and Quality Due to Stress

5.1.3 Morphological Traits for Improving Productivity

5.1.4 Growing Importance in the Face of Climate Change and Increasing Population

5.2 Abiotic Stresses Affecting Lentil

5.2.1 Heat Tolerance

5.2.2 Cold Tolerance

5.2.3 Drought Tolerance

5.2.4 Flooding and Submergence Tolerance

5.2.5 Salinity Tolerance

5.3 Lentil Wild Relatives as a Source of Tolerance to Abiotic Stress

5.4 Genetic Diversity Studies in Lentil

5.5 Next Generation Technologies as a Platform for Genomics Aided Breeding

5.6 Transcriptome Analysis of Lentil in Response to Abiotic Stresses

5.7 Molecular Mapping of Tolerance Genes and QTLs

5.8 Marker-Assisted Selection (MAS) in Lentil

5.9 Conclusion

6 Genomic Design for Abiotic Stress Resistance in Pigeonpea

6.1 Introduction

6.1.1 Economic Importance of the Crop.

6.1.2 Reduction in Yield and Quality Due to Abiotic Stresses

6.1.3 Importance in the Era of Changing Climate and Growing Population

6.1.4 Limitations of Traditional Breeding and Rational of Genome Designing

6.2 Descriptions of Different Abiotic Stresses

6.2.1 Drought Resistance

6.2.2 Waterlogging

6.2.3 Salinity Tolerance

6.2.4 Temperature Tolerance

6.2.5 Photoperiod

6.2.6 Al Toxicity

6.2.7 Traditional Breeding

6.2.8 Limitations and Prospect of Genomic Designing

6.3 Genetic Resources of Resistance/Tolerance Genes

6.3.1 Primary Gene Pool (GP1)

6.3.2 Secondary Gene Pool (GP2)

6.3.3 Tertiary Gene Pool (GP3)

6.4 Glimpses on Classical Genetics and Traditional Breeding

6.4.1 Classical Mapping Efforts

6.4.2 Limitations of Classical Endeavors and Utility of Molecular Mapping

6.4.3 Breeding Objectives

6.4.4 Classical Breeding Achievements

6.4.5 Limitations of Traditional Breeding and Rationale for Molecular Breeding

6.5 Diversity Analysis in Pigeonpea

6.5.1 Phenotype-Based Diversity Analysis

6.5.2 Genotype-Based Diversity Analysis

6.5.3 Relationship with Other Cultivated and Wild Species

6.5.4 Relationship with Geographical Distribution

6.5.5 Extent of Genetic Diversity

6.6 Molecular Mapping of Resistance Genes and QTLs

6.6.1 Brief History of Mapping Efforts in Pigeonpea

6.6.2 Evolution of Marker Types

6.6.3 Mapping Populations Used

6.6.4 Association Mapping

6.6.5 Trait Mapping

6.6.6 Next-Generation Based Trait Mapping

6.7 Marker-Assisted Breeding for Resistance Traits

6.7.1 Germplasm Characterization and DUS

6.7.2 Marker-Assisted Gene Introgression

6.7.3 Gene Pyramiding

6.7.4 Limitations and Prospects of MAS and MABCB

6.8 Map-Based Cloning of Resistance Genes

6.8.1 Traits and Genes Targeted for Map-Based Cloning.

6.8.2 BAC Library for Cloning

6.8.3 Expression of Cloned Genes

6.9 Genomics-Aided Breeding for Resistance

6.9.1 Details of Genome Sequencing

6.9.2 Organelle Sequencing

6.9.3 Application of Genomics-Assisted Breeding

6.10 Recent Concepts and Strategies Developed

6.10.1 Gene Editing

6.10.2 Nanotechnology

6.11 Genetic Engineering for Resistance

6.11.1 Transgenic Achievements in Pigeonpea

6.11.2 Genetic Resources in Pigeonpea for Development of Abiotic Stress Tolerant Transgenic Plant

6.11.3 Transgenic Pigeonpea Development for Abiotic Stress Tolerance

6.11.4 Future Prospects

6.12 Brief Accounts on Role of Bioinformatics as a Tool

6.12.1 Genomic Resources

6.12.2 Comprehensive Transcriptomic Resources

6.13 Brief Account on Social, Political and Regulatory Issues

6.13.1 Patent and Intellectual Property Rights (IPR) Issues

6.13.2 Farmers Right

6.13.3 Participatory Plant Breeding (PPB)

6.14 Future Perspectives

6.14.1 Potential for Expansion of Productivity

6.14.2 Potential for Expansion into Nontraditional Areas

7 Genetic and Genomic Research for Abiotic Stresses in Faba Bean

7.1 Introduction

7.2 Major Abiotic Stresses

7.2.1 Cold Stress

7.2.2 Heat Stress

7.2.3 Drought Stress

7.2.4 Acidic Soils

7.2.5 Soil Salinity

7.3 Breeding Efforts

7.3.1 Cold Tolerance

7.3.2 Heat Tolerance

7.3.3 Drought Tolerance

7.3.4 Tolerance to Acidic Soils

7.3.5 Tolerance to Salinity

7.4 Genetic Resources and Diversity

7.5 Traditional Breeding Methods

7.6 Speed Breeding

7.7 Genetic and Genomics Research

7.8 Conclusions and Future Direction

8 Genomic Designing for Abiotic Stress Tolerance in Mungbean and Urdbean

8.1 Introduction

8.1.1 Economic Importance

8.1.2 Reductions in Yield and Quality Due to Abiotic Stresses.

8.1.3 Growing Importance in the Face of Climate Change and Increasing Population.

Notes:

Description based on print version record.

Other Format:

Print version: Kole, Chittaranjan Genomic Designing for Abiotic Stress Resistant Pulse Crops

ISBN:

9783030910396