Research in Computational Molecular Biology : 9th Annual International Conference, RECOMB 2005, Cambridge, MA, USA, May 14-18, 2005, Proceedings / edited by Satoru Miyano, Jill Mesirov, Simon Kasif, Sorin Istrail, Pavel Pevzner, Michael Waterman.

Format:

Book

Contributor:

Miyano, Satoru, editor.

Mesirov, Jill, editor.

Kasif, Simon, editor.

Istrail, Sorin, editor.

Pevzner, Pavel, editor.

Waterman, Michael S., editor.

SpringerLink (Online service)

Series:

Computer Science (Springer-11645)

Lecture notes in computer science. Lecture notes in bioinformatics ; 3500.

Lecture Notes in Bioinformatics ; 3500

Language:

English

Subjects (All):

Algorithms.

Data structures (Computer science).

Computer science--Mathematics.

Computer science.

Database management.

Artificial intelligence.

Bioinformatics.

Algorithm Analysis and Problem Complexity.

Data Structures.

Discrete Mathematics in Computer Science.

Database Management.

Artificial Intelligence.

Local Subjects:

Algorithm Analysis and Problem Complexity.

Data Structures.

Discrete Mathematics in Computer Science.

Database Management.

Artificial Intelligence.

Bioinformatics.

Physical Description:

1 online resource (XVII, 632 pages).

Edition:

First edition 2005.

Contained In:

Springer eBooks

Place of Publication:

Berlin, Heidelberg : Springer Berlin Heidelberg : Imprint: Springer, 2005.

System Details:

text file PDF

Summary:

This volume contains the papers presented at the 9th Annual International Conference on Research in Computational Molecular Biology (RECOMB 2005), which was held in Cambridge, Massachusetts, on May 14-18, 2005. The RECOMB conference series was started in 1997 by Sorin Istrail, Pavel Pevzner and Michael Waterman. The list of previous meetings is shown below in the s- tion "Previous RECOMB Meetings. " RECOMB 2005 was hosted by the Broad Institute of MIT and Harvard, and Boston University's Center for Advanced - nomic Technology, and was excellently organized by the Organizing Committee Co-chairs Jill Mesirov and Simon Kasif. This year, 217 papers were submitted, of which the Program Committee - lected 39 for presentation at the meeting and inclusion in this proceedings. Each submission was refereed by at least three members of the Program Committee. After the completion of the referees' reports, an extensive Web-based discussion took place for making decisions. From RECOMB 2005, the Steering Committee decided to publish the proceedings as a volume of Lecture Notes in Bioinf- matics (LNBI) for which the founders of RECOMB are also the editors. The prominent volume number LNBI 3500 was assigned to this proceedings. The RECOMB conference series is closely associated with the Journal of Compu- tional Biology which traditionally publishes special issues devoted to presenting full versions of selected conference papers. The RECOMB Program Committee consistedof42members,aslistedonaseparatepage. Iwouldliketothank the RECOMB 2005 Program Committee members for their dedication and hard work.

Contents:

Efficient Algorithms for Detecting Signaling Pathways in Protein Interaction Networks

Efficient Algorithms for Detecting Signaling Pathways in Protein Interaction Networks

Towards an Integrated Protein-Protein Interaction Network

The Factor Graph Network Model for Biological Systems

Pairwise Local Alignment of Protein Interaction Networks Guided by Models of Evolution

Finding Novel Transcripts in High-Resolution Genome-Wide Microarray Data Using the GenRate Model

Efficient Calculation of Interval Scores for DNA Copy Number Data Analysis

Keynote

A Regulatory Network Controlling Drosophila Development

Yeast Cells as a Discovery Platform for Neurodegenerative Disease

RIBRA-An Error-Tolerant Algorithm for the NMR Backbone Assignment Problem

Avoiding Local Optima in Single Particle Reconstruction

A High-Throughput Approach for Associating microRNAs with Their Activity Conditions

RNA-RNA Interaction Prediction and Antisense RNA Target Search

Consensus Folding of Unaligned RNA Sequences Revisited

Discovery and Annotation of Genetic Modules

Efficient q-Gram Filters for Finding All ?-Matches over a Given Length

A Polynomial Time Solvable Formulation of Multiple Sequence Alignment

A Fundamental Decomposition Theory for Phylogenetic Networks and Incompatible Characters

Reconstruction of Reticulate Networks from Gene Trees

A Hybrid Micro-Macroevolutionary Approach to Gene Tree Reconstruction

Constructing a Smallest Refining Galled Phylogenetic Network

Mapping Molecular Landscapes Inside Cells

Information Theoretic Approaches to Whole Genome Phylogenies

Maximum Likelihood of Evolutionary Trees Is Hard

Graph Theoretical Insights into Evolution of Multidomain Proteins

Peptide Sequence Tags for Fast Database Search in Mass-Spectrometry

A Hidden Markov Model Based Scoring Function for Mass Spectrometry Database Search

EigenMS: De Novo Analysis of Peptide Tandem Mass Spectra by Spectral Graph Partitioning

Biology as Information

Using Multiple Alignments to Improve Gene Prediction

Learning Interpretable SVMs for Biological Sequence Classification

Segmentation Conditional Random Fields (SCRFs): A New Approach for Protein Fold Recognition

Rapid Protein Side-Chain Packing via Tree Decomposition

Recognition of Binding Patterns Common to a Set of Protein Structures

Predicting Protein-Peptide Binding Affinity by Learning Peptide-Peptide Distance Functions

Amino Acid Sequence Control of the Folding of the Parallel ?-Helix, the Simplest ?-Sheet Fold

A Practical Approach to Significance Assessment in Alignment with Gaps

Alignment of Optical Maps

Engineering Gene Regulatory Networks: A Reductionist Approach to Systems Biology

Modeling the Combinatorial Functions of Multiple Transcription Factors

Predicting Transcription Factor Binding Sites Using Structural Knowledge

Motif Discovery Through Predictive Modeling of Gene Regulation

HAPLOFREQ - Estimating Haplotype Frequencies Efficiently

Improved Recombination Lower Bounds for Haplotype Data

A Linear-Time Algorithm for the Perfect Phylogeny Haplotyping (PPH) Problem

Human Genome Sequence Variation and the Inherited Basis of Common Disease

Stability of Rearrangement Measures in the Comparison of Genome Sequences

On Sorting by Translocations.

Other Format:

Printed edition:

ISBN:

978-3-540-31950-4

9783540319504

Access Restriction:

Restricted for use by site license.