Alignment-free models in plant genomics : theoretical, experimental, and legal issues / Humberto González-Díaz ... [et al.].

Format:

Book

Contributor:

González-Díaz, Humberto.

Series:

Agriculture issues and policies series.

Agriculture issues and policies

Language:

English

Subjects (All):

Plant genome mapping.

Bioinformatics--Mathematical models.

Bioinformatics.

QSAR (Biochemistry).

Physical Description:

1 online resource (94 p.)

Edition:

1st ed.

Place of Publication:

New York : Nova Science Publishers, 2010.

Language Note:

English

Summary:

The MARCH-INSIDE approach is a computational method that can be used to seek quantitative structure-property relationships (QSAR) models in genes and their product. This book reviews previous applications of MARCH-INSIDE.

Contents:

Intro

ALIGNMENT-FREE MODELS IN PLANT GENOMICS: THEORETICAL, EXPERIMENTAL, AND LEGAL ISSUES

CONTENTS

PREFACE

Chapter 1 INTRODUCTION

Chapter 2 RESULTS AND DISCUSSION. 1. FIRST PART: THEORETICAL BASES OF MARCH-INSIDE SEQUENCE PSEUDO-FOLDING INDICES

1.1. CALCULATING PSEUDO-FOLDING TOPOLOGICAL INDICES WITH MARCH-INSIDE APPROACH

1.2. FINDING THE PSEUDO-FOLDING QSAR MODELS WITH LINEAR DISCRIMINANT ANALYSIS (LDA)

Chapter 3 2. SECOND PART: MARCH-INSIDE MODELS RELEVANT TO PLANT GENOMICS

2.1. PSEUDO-FOLDING QSAR MODELS FOR DISCOVERY OF PLANT RNASE PROTEINS AND GENE

2.2. PSEUDO-FOLDING QSAR MODELS FOR DISCOVERY OF PLANT ACOS PROTEINS AND GENE

2.3. PSEUDO-FOLDING QSAR MODELS FOR DISCOVERY OF PLANT PGS PROTEINS AND GENE

2.3. PSEUDO-FOLDING QSAR MODELS FOR ANNOTATION OF PLANT RIBOSOMAL RNA AND GENE

Chapter 4 3. THIRD PART: LEGAL ISSUES RELATED QSAR AND BIOINFORMATICS IN PLANT GENOMICS

3.1. INTELLECTUAL PROPERTY ISSUES IN PLANT GENOMIC

Patent on Plant

Plant Variety Protection

International Trends in Plant Variety Protection Rights

3.2. METHODS FOR LEGAL PROTECTION OF BIOINFORMATICS COMPUTER SOFTWARE IN PLANT GENOMICS

3.2.1. Intellectual Property Protection

3.2.1.2. Copyright

Patent Protection in Genomics

Trade Secret Protection

Trademark Protection

Copyright and Contractual Issues

3.2.2. Tax Issues for Software Used in Genomics

3.3. SCIENTIFIC SOFTWARE RESULTS: LEGAL ACCEPTANCE

3.3.1. Regulatory Uses for QSAR Models Relevant to Drug Design and/or Genomics

CONCLUSIONS

ACKNOWLEDGMENTS

REFERENCES

INDEX

Blank Page.

Notes:

Description based upon print version of record.

Includes bibliographical references and index.

Description based on print version record and CIP data provided by publisher.

ISBN:

1-61668-603-0

OCLC:

923662495