Understanding molecular simulation : from algorithms to applications / Daan Frenkel, Berend Smit.

Format:

Book

Author/Creator:

Frenkel, Daan, 1948-

Contributor:

Smit, Berend, 1962-

Series:

Computational science (San Diego, Calif.)

Computational science series ; 1

Language:

English

Subjects (All):

Intermolecular forces--Computer simulation.

Intermolecular forces.

Molecules--Mathematical models.

Molecules.

Physical Description:

1 online resource (661 p.)

Edition:

2nd ed.

Place of Publication:

San Diego : Academic Press, c2002.

Language Note:

English

Summary:

Understanding Molecular Simulation: From Algorithms to Applications explains the physics behind the ""recipes"" of molecular simulation for materials science. Computer simulators are continuously confronted with questions concerning the choice of a particular technique for a given application. A wide variety of tools exist, so the choice of technique requires a good understanding of the basic principles. More importantly, such understanding may greatly improve the efficiency of a simulation program. The implementation of simulation methods is illustrated in pseudocodes and their practic

Contents:

Front Cover; Understanding Molecular Simulation: From Algorithms to Applications; Copyright Page; Contents; Preface to the Second Edition; Preface; List of Symbols; Chapter 1. Introduction; Part I: Basics; Chapter 2. Statistical Mechanics; 2.1 Entropy and Temperature; 2.2 Classical Statistical Mechanics; 2.3 Questions and Exercises; Chapter 3. Monte Carlo Simulations; 3.1 The Monte Carlo Method; 3.2 A Basic Monte Carlo Algorithm; 3.3 Trial Moves; 3.4 Applications; 3.5 Questions and Exercises; Chapter 4. Molecular Dynamics Simulations; 4.1 Molecular Dynamics: The Idea

4.2 Molecular Dynamics: A Program4.3 Equations of Motion; 4.4 Computer Experiments; 4.5 Some Applications; 4.6 Questions and Exercises; Part II: Ensembles; Chapter 5. Monte Carlo Simulations in Various Ensembles; 5.1 General Approach; 5.2 Canonical Ensemble; 5.3 Microcanonical Monte Carlo; 5.4 Isobaric-Isothermal Ensemble; 5.5 Isotension-Isothermal Ensemble; 5.6 Grand-Canonical Ensemble; 5.7 Questions and Exercises; Chapter 6. Molecular Dynamics in Various Ensembles; 6.1 Molecular Dynamics at Constant Temperature; 6.2 Molecular Dynamics at Constant Pressure; 6.3 Questions and Exercises

Part III: Free Energies and Phase EquilibriaChapter 7. Free Energy Calculations; 7.1 Thermodynamic Integration; 7.2 Chemical Potentials; 7.3 Other Free Energy Methods; 7.4 Umbrella Sampling; 7.5 Questions and Exercises; Chapter 8. The Gibbs Ensemble; 8.1 The Gibbs Ensemble Technique; 8.2 The Partition Function; 8.3 Monte Carlo Simulations; 8.4 Applications; 8.5 Questions and Exercises; Chapter 9. Other Methods to Study Coexistence; 9.1 Semigrand Ensemble; 9.2 Tracing Coexistence Curves; Chapter 10. Free Energies of Solids; 10.1 Thermodynamic Integration; 10.2 Free Energies of Solids

10.3 Free Energies of Molecular Solids10.4 Vacancies and Interstitials; Chapter 11. Free Energy of Chain Molecules; 11.1 Chemical Potential as Reversible Work; 11.2 Rosenbluth Sampling; Part IV: Advanced Techniques; Chapter 12. Long-Range Interactions; 12.1 Ewald Sums; 12.2 Fast Multipole Method; 12.3 Particle Mesh Approaches; 12.4 Ewald Summation in a Slab Geometry; Chapter 13. Biased Monte Carlo Schemes; 13.1 Biased Sampling Techniques; 13.2 Chain Molecules; 13.3 Generation of Trial Orientations; 13.4 Fixed Endpoints; 13.5 Beyond Polymers; 13.6 Other Ensembles; 13.7 Recoil Growth

13.8 Questions and ExercisesChapter 14. Accelerating Monte Carlo Sampling; 14.1 Parallel Tempering; 14.2 Hybrid Monte Carlo; 14.3 Cluster Moves; Chapter 15. Tackling Time-Scale Problems; 15.1 Constraints; 15.2 On-the-Fly Optimization: Car-Parrinello Approach; 15.3 Multiple Time Steps; Chapter 16. Rare Events; 16.1 Theoretical Background; 16.2 Bennett-Chandler Approach; 16.3 Diffusive Barrier Crossing; 16.4 Transition Path Ensemble; 16.5 Searching for the Saddle Point; Chapter 17. Dissipative Particle Dynamics; 17.1 Description of the Technique; 17.2 Other Coarse-Grained Techniques

Part V: Appendices

Notes:

Description based upon print version of record.

Includes bibliographical references (p. [589]-617) and index.

ISBN:

9786611019747

9781281019745

1281019747

9780080519982

0080519989

OCLC:

173686073