Image processing with ImageJ : discover the incredible possibilities of ImageJ, from basic image procesing to macro and plugin development / José María Mateos Pérez, Javier Pascau.

Format:

Book

Author/Creator:

Mateos Pérez, José Maria.

Contributor:

Pascau, Javier.

Series:

Community experience distilled

Language:

English

Subjects (All):

Image processing--Digital techniques.

Image processing.

Physical Description:

1 online resource (140 p.)

Edition:

1st ed.

Place of Publication:

Birmingham : Packt Publishing, 2013.

Language Note:

English

System Details:

Mode of access: World Wide Web.

Summary:

The book will help readers discover the various facilities of ImageJ through a tutorial-based approach.This book is targeted at scientists, engineers, technicians, and managers, and anyone who wishes to master ImageJ for image viewing, processing, and analysis. If you are a developer, you will be able to code your own routines after you have finished reading this book. No prior knowledge of ImageJ is expected.

Contents:

""Cover ""; ""Copyright""; ""Credits""; ""About the Authors""; ""About the Reviewers""; ""www.PacktPub.com""; ""Table of Contents""; ""Preface""; ""Chapter 1: Getting Started with ImageJ ""; ""ImageJ � history and motivation""; ""What ImageJ is for (and what it is not for)""; ""Installing ImageJ""; ""Windows""; ""Linux / Mac OS""; ""First run""; ""Updating the installation""; ""Configuration options""; ""Memory limit increase""; ""Summary""; ""Chapter 2 : Basic Image Processing with ImageJ""; ""Image reading/writing""; ""Opening images with a certain format""; ""Reading raw data""

""Online sample images""""Saving images""; ""Zooming on the image, pixel values""; ""Color and multichannel images""; ""3D and 4D images � stacks and hyperstacks""; ""Image adjust tools""; ""Image histogram and window/level parameters""; ""Thresholding""; ""Image resizing""; ""Summary""; ""Chapter 3 : Advanced Image Processing with ImageJ""; ""Selecting regions of your image""; ""Basic selections � lines, length, and profiles""; ""Drawing regions of interest over an area""; ""ROI manager and the image overlay""; ""Filters""; ""Image filtering in the spatial domain""; ""Edge detection""

""The Fourier transform""""Image filtering in the frequency domain""; ""Particle analysis""; ""Summary""; ""Chapter 4 : ImageJ Macros""; ""What is an ImageJ macro""; ""The macro recorder""; ""Running macros""; ""Modifying a recorded macro""; ""More about the macro language � basic syntax and operators""; ""Variables""; ""A brief note on debugging a macro""; ""Control structures""; ""The for loop""; ""The while loop""; ""The if (condition) and if (condition) � else statements""; ""Defining functions""; ""Some useful procedures""; ""Opening an image from a macro""

""Finding out how many images are open""""Obtaining the dimensions of an image""; ""A note on slices, frames, and channels""; ""Selecting a specific image""; ""Speeding up a macro""; ""Adding a GUI to your macro""; ""The batch mode""; ""Installing macros for easy access""; ""Shared macros � the ImageJ macro directory""; ""Summary""; ""Chapter 5 : ImageJ Plugins for Users""; ""ImageJ plugins""; ""Installing a plugin""; ""Some useful plugins""; ""LOCI Bio-Formats""; ""Image segmentation""; ""Auto Threshold and Auto Local threshold""; ""The trainable Weka segmentation""

""SIOX (Simple Interactive Object Extraction)""""Clustering""; ""Image registration""; ""Stackreg""; ""3D volume rendering""; ""Volume Viewer""; ""Other utilities""; ""MosaicJ""; ""FigureJ""; ""Study anonymization""; ""FIJI (Fiji Is Not ImageJ)""; ""Summary""; ""Chapter 6 : ImageJ Plugins for Developers""; ""A sample plugin""; ""The PlugInFilter interface""; ""Adding a GUI to your plugin""; ""The ImageJ plugin API""; ""Setting up ImageJ under the Eclipse IDE""; ""Our first Eclipse ImageJ plugin""; ""Sharing your plugin""; ""Using external libraries""; ""Summary""; ""Index""

Notes:

Includes index.

Includes bibliographical references and index.

Description based on online resource; title from PDF title page (ebrary, viewed October 8, 2013).

ISBN:

9781783283965

1783283963

OCLC:

858974912