BIBE 2004. Fourth IEEE Symposium on Bioinformatics and Bioengineering : proceedings : 19-21 May, 2004, Taichung, Taiwan, ROC / sponsored by IEEE Computer Society ; in cooperation with the IEEE Neural Networks Society ... [and others].

Format:

Book

Conference/Event

Contributor:

IEEE Xplore (Online service)

IEEE Computer Society.

IEEE Neural Networks Society.

Conference Name:

IEEE International Symposium on Bioinformatics and Bioengineering (4th : 2004 : Taichung, Taiwan)

Language:

English

Subjects (All):

Bioinformatics--Congresses.

Bioinformatics.

Biomedical engineering--Congresses.

Biomedical engineering.

Genre:

Conference papers and proceedings.

Physical Description:

xviii, 613 pages : illustrations

Other Title:

Bioinformatics and bioengineering

Place of Publication:

Los Alamitos, Calif. : IEEE Computer Society, [2004]

System Details:

Mode of access: World Wide Web.

text file

Contents:

Tumor Suppressor Gene Networks as Molecular Targets for Developing New Cancer Treatments / W.-H. Lee 1

Computational Inference of Transcription Regulation and Response Networks in Synechococcus sp. WH8102 / Y. Xu 5

Session A1 Bioengineering / Session Chair: Yaw-Ling Lin

Retinomorphic Information Processing for Electrical Epi-Retinal Vision Implant Stimulation / A. Schmid 9

A New Dual Channel Pulse Wave Velocity Measurement System / Y.-K. Chen, H.-T. Wu, C.-K. Chi, W.-C. Tsai, J.-Y. Chen, M.-C. Wang 17

Techniques for Enhancing Computation of DNA Curvature Molecules / D. Masotti, E. Ficarra, E. Macii, L. Benini 22

Design of Microfabricated Strain Gauge Array to Monitor Bone Deformation In Vitro and In Vivo / G. Yang, V. Bailey, G. Lin, W. Tang, J. Keyak 30

Towards Automating an Interventional Radiology Procedure / W. Zheng, A. Aziz, I. Volkov, X. Ma, F. Chau, M. Ang Jr., W. Nowinski 38

Session B1 Data Integration and Protein Folding / Session Chair: Jan-Ming Ho

A Language for Comprehensively Supporting the In Vitro Experimental Process In Silico / A. Troger, A. Fernandes 47

Towards Ubiquitous Bio-information Computing: Data Protocols, Middleware, and Web Service for Heterogeneous Biological Information Integration and Retrieval / P. Hong, S. Zhong, W. Wong 57

A Service Discovery Approach in Support of Web Service Integration / Z. Miled, M. Mahoui, N. Gao, L. Lu, J. Chen, Y. He, B. Omran 65

Case-Control Study of Binary Disease Trait Considering Interactions between SNPs and Environmental Effects Using Logistic Regression / R. Nakamichi, S. Imoto, S. Miyano 73

Reducing the Computational Load of Energy Evaluations for Protein Folding / E. Santos, E. Santos, Jr. 79

An Iterative Relaxation Technique for the NMR Backbone Assignment Problem / W. L. Hsu, J. M. Chang, W. C. Chou, J. B. Chen, K. P. Wu, T. Y. Sung, C. F. Chang, W. J. Wu, T. H. Huang 89

Session A2 Medical Image Processing I / Session Chair: Tung-Shou Chen

Knowledge-Driven Extraction of the Four Modified Talairach Cortical Landmarks (A, P, L, and R) from MR Neuroimages / Q. Hu, W. Nowinski 93

Breast Ultrasound Image Classification Using Fractal Analysis / R.-F. Chang, C.-J. Chen, M.-F. Ho 100

Quantitative Computer Image Analysis of Serum [alpha]-Fetoprotein Rapid Gold Immunochromatographic Dipstick Assay / L. Chuang, J.-Y. Hwang, H.-C. Chang, I.-C. Jou, S.-B. Jong 108

Segmentation of the Sylvian Fissure in Brain MR Images / W. Qian, Z. Hou, Q. Hu, A. Aamer, W. Nowinski 115

Session B2 Parallel Processing and Primer Design / Session Chair: Yuh-Jyh Hu

Fast Parallel Molecular Algorithms for DNA-Based Computation: Factoring Integers / W.-L. Chang, M. Ho, M. Guo 125

An Effective Approach for Constructing the Phylogenetic Tree on a Grid-Based Architecture / C.-H. Wu, D. Liu 134

Using Distributed Computing Platform to Solve High Computing and Huge Data Processing Problems in Bioinformatics / S.-N. Chen, J. Tsai, C.-W. Huang, R.-M. Chen, R. Lin 142

Design of Specie-Specific Primers for Virus Diagnosis in Plants with PCR / K. Rocha, C. Medeiros, M. Monteiro, L. Goncalves, P. Marinho 149

Session A3 Medical Image Processing II / Session Chair: Chun-Ming Chang

Interactive Polyp Biopsy Based on Automatic Segmentation of Virtual Colonoscopy / C.-C. Ko, J-W. Jang 159

Embedded Medical Image Compression Using DCT Based Subband Decomposition and Modified SPIHT Data Organization / Y.-Y. Chen, S.-C. Tai, C. Chou 167

Semantic Integration and Knowledge Exchange for Diagnostic Medical Image Databases / A. Barb, C.-R. Shyu, Y. Sethi 175

Discrimination between Alzheimer's Dementia and Controls by Automated Analysis of Statistical Parametric Maps of [superscript 99m]Tc-HMPAO-SPECT Volumes / T.-K. Yin, N.-T. Chiu 183

Quantitation of Extra-Capsular Prostate Tissue from Reconstructed Tissue Images / R. Hussein, F. McKenzie, P. Schellhammer, J. Diaz 191

Session B3 Medical Informatics / Session Chair: S. M. Vincent Tseng

GeneWebEx:Gene Annotation Web Extraction, Aggregation, and Updating from Web-Based Biomolecular Databanks / M. Masseroli, A. Stella, N. Meani, M. Alcalay, F. Pinciroli 199

Biomedical Ontologies in Post-Genomic Information Systems / D. Perez-Rey, V. Maojo, M. Garcia-Remesal, R. Alonso-Calvo 207

European Support to Biomedical Informatics Development: in Pursue of Genomic Medicine / F. Sanz, C. Diaz, F. Martin-Sanchez, J. Bonis 215

INBIOMED: A Platform for the Integration and Sharping of Genetic, Clinical and Epidemiological Data Oriented to Biomedical Research / V. Lopez-Alonso, J. Sanchez, I. Liebana, I. Hermosilla, F. Martin-Sanchez 222

ARMEDA II: Supporting Genomic Medicine through the Integration of Medical and Genetic Databases / M. Garcia-Remesal, V. Maojo, H. Billhardt, J. Crespo, R. Alonso-Calvo, D. Perez-Rey, F. Martin, A. Sousa 227

Banquet Speech

Accelerating Trans-Disciplinary Research to a Knowledge-Sharing Infrastracture / H. Yamaguchi 237

Protein Network in DNA Damage Response and Breast Carcinogenesis / E. Lee 241

Virtual Reality in Brain Interventions / W. Nowinski 245

Session A4 Gene Expression / Session Chair: Chung-Chin Lu

Integration of Cluster Ensemble and Text Summarization for Gene Expression Analysis / X. Hu 251

Identifying Projected Clusters from Gene Expression Profiles / K. Yip, D. Cheung, M. Ng, K.-H. Cheung 259

Model-Based Clustering with Genes Expression Dynamics for Time-Course Gene Expression Data / F.-X. Wu, W.-J. Zhang, A. Kusalik 267

Enhanced pClustering and Its Applications to Gene Expression Data / S. Yoon, C. Nardini, L. Benini, G. de Micheli 275

Mining Deterministic Biclusters in Gene Expression Data / Z. Zhang, A. Teo, B. C. Ooi, K.-L. Tan 283

Session B4 Transcriptome and Functional Genomics / Session Chair: Jorng-Tzong Horng

The Application of Alternative Splicing Graphs in Quantitative Analysis of Alternative Splicing Form from EST Database / H.-C. Chang, P.-S. Yu, T.-W. Huang, Y.-L. Lin, F.-R. Hsu 293

A Method for Evaluating the Quality of String Dissimilarity Measures and Clustering Algorithms for EST Clustering / J. Zimmermann, Z. Liptak, S. Hazelhurst 301

Genome-Wide Alternative Splicing Events Detection through Analysis of Large Scale ESTs / F. R. Hsu, H.-Y. Chang, Y.-L. Lin, Y.-T. Tsai, H.-L. Peng, Y. T. Chen, C. F. Chen, C. Y. Cheng, C.-H. Liu, M. Y. Shih 310

Incorporating Ontology-Driven Similarity Knowledge into Functional Genomics: An Exploratory Study / F. Azuaje, O. Bodenreider 317

Identifying the Combination of Genetic Factors that Determine Susceptibility to Cervical Cancer / J.-T. Horng, K.-C. Hu, L.-C. Wu, H.-D. Huang, F.-M. Lin, S.-L. Huang, H.-C. Lai, T.-Y. Chu 325

Death Domain Resource: An Integrated Protein Domain Database / Y-W. Deng, C-H. Wei, U-C. Yang 333

Session A5 Microarray Data Analysis / Session Chair: Ka-Lok Ng

Markov Decision Processes Based Optimal Control Policies for Probabilistic Boolean Networks / O. Abul, R. Alhajj, F. Polat 337

A Multi-Information Based Gene Scoring Method with Applications on Analysis of Hepatocellular Carcinoma / H.-H. Yu, V. S.-M. Tseng, J.-H. Chuang 345

Friendly Neighbors Method for Unsupervised Determination of Gene Significance in Time-Course Microarray Data / K. Murthy, V. Vega 351

Identifying Significant Genes from Microarray Data / H.-Y. Chuang, H. Liu, S. Brown, C. McMunn-Coffran, C.-Y. Kao, D. Hsu 358

A Time Series Analysis of Microarray Data / S. Erdal, O. Ozturky, D. Armbruster, H. Ferhatosmanogluy, W. Ray 366

Session B5 Homology Search / Session Chair: Kun-Mao Chao

Good Spaced Seeds for Homology Search / K. P. Choi, F. Zeng, L. Zhang 379

Estimating Seed Sensitivity on Homogeneous Alignments / G. Kucherov, L. Noe, Y. Ponty 387

An IDC-Based Algorithm for Efficient Homology Filtration with Guaranteed Seriate Coverage / H. P. Lee, Y. T. Tsai, C. H. Shih, T. F. Sheu, C. Y. Tang 395

Efficient Filtration of Sequence Similarity Search through Singular Value Decomposition / S. Aghili, O. Sahin, D. Agrawal, A. Abbadi 403

Efficient Methods for Generating Optimal Single and Multiple Spaced Seeds / I.-H. Yang, S.-H. Wang, Y.-H. Chen, P.-H. Huang, L. Ye, X. Huang, K.-M. Chao 411

Session A6 Proteomics / Session Chair: Min-Jing Hwang

Towards a Proteomics Meta-Classification / A. Kumar, B. Smith 419

An Efficient Mechanism for Prediction of Protein-Ligand Interactions Based on Analysis of Protein Tertiary Substructures / D. Chang, C.-Y. Chen, Y.-J. Oyang, H.-F. Juan, H.-C. Huang 427

Domain Combination Based Protein-Protein Interaction Possibility Ranking Method / D.-S. Han, H.-S. Kim, W.-H. Jang, S.-D. Lee 434

Dihedral Angle Database Based on Disulfide Bonds / S. Dayalan, S. Bevinakoppa 442

Session B6 Sequence Analysis / Session Chair: Bertrand M.T. Lin

Automating the Determination of Open Reading Frames in Genomic Sequences Using the Web Service Techniques

A Case Study Using SARS Coronavirus / P. Chang, V.-W. Soo, T.-Y. Chen, W.-S. Lai, S.-C. Su, Y.-L. Huang 451

FMGA: Finding Motifs by Genetic Algorithm / F. Liu, J. Tsai, R.M. Chen, S.N. Chen, S.H. Shih 459

A Computational Framework for Nucleic Acid Sub-Sequence Identification / S. Mann, P. Chen, L. Eaton 467

Automatically Predicting Possible Loci of Variable Number of Tandem Repeats / C.-H. Chang, H.-Y. Chuang, Y.-H. Chiang, C.-S. Chiou, H.-I. Lu, C.-Y. Kao 475

Constraint Based Method for Finding Motifs in DNA Sequences / X. Dong, S. Y. Sung, W.-K. Sung, C. L. Tan 483

Application of Visual Display Techniques to Solve Some Biological Problems / R. Lee 493

SemanticObjects and Biomedical Informatics / A. Kitazawa, M. Yoshimura 497

Session A7 Structural Biology / Session Chair: Ping-Chiang Lyu

Interactive 3D Protein Structure Visualization Using Virtual Reality / E. Moritz, J. Meyer 503

Automatic Protein Structure Classification through Structural Fingerprinting / Z. Aung, K.-L. Tan 508

Derivation and Analysis of Fragment Libraries of Protein Structures / I.-Y. Lee, T.-T. Soong, J.-M. Ho, M.-J. Hwang 516

A Fast Protein Structure Retrieval System Using Image-Based Distance Matrices and Multidimensional Index / P.-H. Chi, G. Scott, C.-R. Shyu 522

Session B7 Algorithms / Session Chair: Chang-Biau Yang

An Improved Algorithm for the Maximum Agreement Subtree Problem / C.-M. Lee, L.-J. Hungy, M.-S. Changz, C.-Y. Tang 533

Protein Threading with Profiles and Constraints / T. Akutsu, M. Hayashida, E. Tomita, J. Suzuki, K. Horimoto 537

A Mutation-Sensitive Approach for Locating Conserved Gene Pairs between Related Species / H.L. Chan, T.W. Lam, W.K. Sung, P. Wong, S. M. Yiu 545

Sorting by Transpositions Based on the First Increasing Substring Concept / M. C. Chen, R. Lee 553

Session A8 Protein-Protein Interactions / Session Chair: Jenn-Kang Hwang

A Cross-Species Study of the Protein-Protein Interaction Networks via the Random Graph Approach / K.-L. Ng, C.-H. Huang 561

Discovering Novel Interacting Motif Pairs from Large Protein-Protein Interaction Datasets / S.-H. Tan, W.-K. Sung, S.-K. Ng 568

Prediction of Protein-Protein Interactions Using Support Vector Machines / S. Dohkan, A. Koike, T. Takagi 576

Session B8 Algorithms and Intelligent Systems / Session Chair: Chuan-Yi Tang

Indexing Genomic Databases / G. Cooper, M. Raymer, T. Doom, D. Krane, N. Futamura 587

Phylogenetic Reconstruction from Arbitrary Gene-Order Data / J. Tang, B. Moret, L. Cui, C. dePamphlis 592

Semantic Analysis and Synthesis of Complex Biological Systems / F. Xie, P. Sheu, A. Lander, V. Christini 600.

Notes:

"IEEE Computer Society Order Number P2173"--T.p. verso.

Includes bibliographical references and author index.

ISBN:

0769521738

9780769521732

OCLC:

55803192

Access Restriction:

Restricted for use by site license.